Index

A

affy_snp_id (database.models.VariantSpecies attribute) affymetrix_ab (database.models.Location attribute) alias (database.models.SampleSpecies attribute)

aliases (database.models.Breed attribute) alleles (database.models.Location attribute) alpha_2 (database.models.Country attribute) alpha_3 (database.models.Country attribute)

B

BACKGROUND (database.models.SAMPLETYPE attribute) Breed (class in database.models) breed (database.models.Dataset attribute) (database.models.SampleSpecies attribute)

Breed.DoesNotExist Breed.MultipleObjectsReturned breed_code (database.models.SampleSpecies attribute) BreedAlias (class in database.models)

C

chest_girth (database.models.Phenotype attribute) chip_name (database.models.Dataset attribute) (database.models.Probeset attribute) (database.models.SampleSpecies attribute) (database.models.VariantSpecies attribute) chrom (database.models.Location attribute) code (database.models.Breed attribute) common module common.views module

complement() (in module database.models) Consequence (class in database.models) consequences (database.models.Location attribute) contents (database.models.Dataset attribute) Country (class in database.models) country (database.models.BreedAlias attribute) (database.models.Dataset attribute) (database.models.SampleSpecies attribute) Country.DoesNotExist Country.MultipleObjectsReturned cust_id (database.models.VariantSpecies attribute)

D

database module database.db module database.models module

Dataset (class in database.models) dataset (database.models.BreedAlias attribute) (database.models.SampleSpecies attribute) Dataset.DoesNotExist Dataset.MultipleObjectsReturned date (database.models.Location attribute) doi (database.models.Dataset attribute)

E

endpoint (common.views.ListView attribute)

F

father_id (database.models.SampleGoat attribute) (database.models.SampleSheep attribute) FEMALE (database.models.SEX attribute)

fid (database.models.BreedAlias attribute) file (database.models.Dataset attribute) FOREGROUND (database.models.SAMPLETYPE attribute)

G

gene_array (database.models.Dataset attribute) get_context_data() (common.views.ListView method)

get_object() (common.views.ModelView method) get_queryset() (common.views.ListView method) (common.views.ModelView method)

H

height (database.models.Phenotype attribute)

I

id (database.models.Breed attribute) (database.models.Country attribute) (database.models.Dataset attribute) (database.models.SampleGoat attribute) (database.models.SampleSheep attribute) (database.models.SmarterInfo attribute) (database.models.SupportedChip attribute) (database.models.VariantGoat attribute) (database.models.VariantSheep attribute)

illumina (database.models.Location attribute) illumina_forward (database.models.Location attribute) illumina_strand (database.models.Location attribute) illumina_top (database.models.Location property) (database.models.VariantSpecies attribute) imported_from (database.models.Location attribute) ImproperlyConfigured initialize_db() (in module database.db)

L

last_updated (database.models.SmarterInfo attribute) length (database.models.Phenotype attribute) ListView (class in common.views)

Location (class in database.models) locations (database.models.SampleSpecies attribute) (database.models.VariantSpecies attribute)

M

MALE (database.models.SEX attribute) manufacturer (database.models.SupportedChip attribute) metadata (database.models.SampleSpecies attribute) model (common.views.ListView attribute) (common.views.ModelView attribute) ModelView (class in common.views) module common common.views database database.db database.models

mother_id (database.models.SampleGoat attribute) (database.models.SampleSheep attribute)

N

n_individuals (database.models.Breed attribute) n_of_individuals (database.models.Dataset attribute) n_of_records (database.models.Dataset attribute) n_of_snps (database.models.SupportedChip attribute)

name (database.models.Breed attribute) (database.models.Country attribute) (database.models.SupportedChip attribute) (database.models.VariantSpecies attribute) numeric (database.models.Country attribute)

O

object_list (common.views.ListView attribute) objects (database.models.Breed attribute) (database.models.Country attribute) (database.models.Dataset attribute) (database.models.SampleGoat attribute) (database.models.SampleSheep attribute) (database.models.SmarterInfo attribute) (database.models.SupportedChip attribute) (database.models.VariantGoat attribute) (database.models.VariantSheep attribute)

official_name (database.models.Country attribute) order_by (common.views.ListView attribute) original_id (database.models.SampleSpecies attribute)

P

page (common.views.ListView attribute) parse_args() (common.views.ListView method) parser (common.views.ListView attribute) partner (database.models.Dataset attribute) Phenotype (class in database.models) phenotype (database.models.SampleSpecies attribute)

plink_specie_opt (database.models.SmarterInfo attribute) position (database.models.Location attribute) Probeset (class in database.models) probeset_id (database.models.Probeset attribute) probesets (database.models.VariantSpecies attribute) purpose (database.models.Phenotype attribute)

Q

queryset (common.views.ListView attribute) (common.views.ModelView attribute)

R

rs_id (database.models.VariantSpecies attribute)

S

SampleGoat (class in database.models) SampleGoat.DoesNotExist SampleGoat.MultipleObjectsReturned SampleSheep (class in database.models) SampleSheep.DoesNotExist SampleSheep.MultipleObjectsReturned SampleSpecies (class in database.models) SAMPLETYPE (class in database.models) sender (database.models.VariantSpecies attribute) sequence (database.models.VariantSpecies attribute) SEX (class in database.models) sex (database.models.SampleSpecies attribute) size (common.views.ListView attribute) size_ (database.models.Dataset attribute) smarter_id (database.models.SampleSpecies attribute) SmarterDBException

SmarterInfo (class in database.models) SmarterInfo.DoesNotExist SmarterInfo.MultipleObjectsReturned species (database.models.Breed attribute) (database.models.Country attribute) (database.models.Dataset attribute) (database.models.SampleGoat attribute) (database.models.SampleSheep attribute) (database.models.SupportedChip attribute) species_class (database.models.SampleGoat attribute) (database.models.SampleSheep attribute) (database.models.SampleSpecies attribute) ss_id (database.models.Location attribute) strand (database.models.Location attribute) SupportedChip (class in database.models) SupportedChip.DoesNotExist SupportedChip.MultipleObjectsReturned

T

to_mongo() (database.models.VariantSpecies method) trait (database.models.Dataset attribute)

type_ (database.models.Dataset attribute) (database.models.SampleSpecies attribute)

U

UNKNOWN (database.models.SEX attribute)

uploader (database.models.Dataset attribute)

V

VariantGoat (class in database.models) VariantGoat.DoesNotExist VariantGoat.MultipleObjectsReturned VariantSheep (class in database.models)

VariantSheep.DoesNotExist VariantSheep.MultipleObjectsReturned VariantSpecies (class in database.models) version (database.models.Location attribute) (database.models.SmarterInfo attribute)

W

working_assemblies (database.models.SmarterInfo attribute)